1.1 --- a/thesis/cortex.bib	Mon May 12 13:26:51 2014 -0400
     1.2 +++ b/thesis/cortex.bib	Mon May 12 15:01:53 2014 -0400
     1.3 @@ -156,8 +156,8 @@
     1.4   volume = {461},
     1.5   month = {8},
     1.6   pages = {941-946},
     1.7 - note = {Available at : 
     1.8 -         \url{http://papers.cnl.salk.edu/PDFs/Intracelllular Dynamics of Virtual Place Cells 2011-4178.pdf}},
     1.9 + note = {Available at :\\
    1.10 +         \burl{http://papers.cnl.salk.edu/PDFs/Intracelllular Dynamics of Virtual Place Cells 2011-4178.pdf}},
    1.11   addendum = {\why{Researchers at Princeton created a special Quake II
    1.12                    level that simulated a maze, and added an interface
    1.13                    where a mouse could run on top of a ball in various

     2.1 --- a/thesis/cortex.org	Mon May 12 13:26:51 2014 -0400
     2.2 +++ b/thesis/cortex.org	Mon May 12 15:01:53 2014 -0400
     2.3 @@ -407,7 +407,7 @@
     2.4  
     2.5  #+BEGIN_LaTeX
     2.6     \begin{sidewaysfigure}
     2.7 -   \includegraphics[width=9.5in]{images/full-hand.png}
     2.8 +   \includegraphics[width=8.5in]{images/full-hand.png}
     2.9     \caption{
    2.10     I modeled my own right hand in Blender and rigged it with all the
    2.11     senses that {\tt CORTEX} supports. My simulated hand has a
    2.12 @@ -2150,7 +2150,7 @@
    2.13     joint from the rest position defined in the Blender file. This
    2.14     simulates the muscle-spindles and joint capsules. I will deal with
    2.15     Golgi tendon organs, which calculate muscle strain, in the next
    2.16 -   chapter.
    2.17 +   section (2.12).
    2.18  
    2.19  *** Helper functions
    2.20  

     3.1 --- a/thesis/rlm-cortex-meng.tex	Mon May 12 13:26:51 2014 -0400
     3.2 +++ b/thesis/rlm-cortex-meng.tex	Mon May 12 15:01:53 2014 -0400
     3.3 @@ -32,6 +32,7 @@
     3.4  \usepackage[utf8]{inputenc}
     3.5  \usepackage[T1]{fontenc}
     3.6  %\usepackage[headheight=14pt]{geometry}
     3.7 +\usepackage[margin=1in]{geometry}
     3.8  %\usepackage{fixltx2e}
     3.9  %\usepackage{graphicx}
    3.10  %\usepackage{longtable}
    3.11 @@ -45,7 +46,6 @@
    3.12  \usepackage{marvosym}
    3.13  \usepackage{wasysym}
    3.14  \usepackage{amssymb}
    3.15 -
    3.16  \usepackage{libertine}
    3.17  \usepackage{inconsolata}
    3.18  \usepackage{rotating}
    3.19 @@ -54,6 +54,7 @@
    3.20  \usepackage{minted}    
    3.21  \usepackage{fancyhdr}
    3.22  \usepackage{hyperref}
    3.23 +\usepackage[anythingbreaks]{breakurl}
    3.24  \fancyhead[RO,LE]{\bfseries \nouppercase{\rightmark}}
    3.25  \renewcommand{\subsectionmark}[1]{\markright{#1}}
    3.26  \renewcommand{\sectionmark}[1]{\markright{#1}}
    3.27 @@ -123,17 +124,15 @@
    3.28  
    3.29  
    3.30  % The thesis!
    3.31 +% dxh debug
    3.32 +%\pagestyle{empty}
    3.33  \pagestyle{plain}
    3.34  
    3.35  \begin{document}
    3.36  \include{cover}
    3.37  
    3.38 -%\pagestyle{plain}
    3.39 +
    3.40  \tableofcontents
    3.41 -%\newpage
    3.42 -%\listoffigures
    3.43 -%\newpage
    3.44 -%\listoftables
    3.45  \pagestyle{fancy}
    3.46  \include{cortex}
    3.47  \pagestyle{plain}