# HG changeset patch
# User Robert McIntyre <rlm@mit.edu>
# Date 1399921313 14400
# Node ID b9b8567c14ee0af5f2693f7f993f7c21889c1609
# Parent  815bc8fe64c0a4faf805a703040d7c5d348dbb53
final fixes; preparing to print final thesis.

diff -r 815bc8fe64c0 -r b9b8567c14ee thesis/cortex.bib
--- a/thesis/cortex.bib	Mon May 12 13:26:51 2014 -0400
+++ b/thesis/cortex.bib	Mon May 12 15:01:53 2014 -0400
@@ -156,8 +156,8 @@
  volume = {461},
  month = {8},
  pages = {941-946},
- note = {Available at : 
-         \url{http://papers.cnl.salk.edu/PDFs/Intracelllular Dynamics of Virtual Place Cells 2011-4178.pdf}},
+ note = {Available at :\\
+         \burl{http://papers.cnl.salk.edu/PDFs/Intracelllular Dynamics of Virtual Place Cells 2011-4178.pdf}},
  addendum = {\why{Researchers at Princeton created a special Quake II
                   level that simulated a maze, and added an interface
                   where a mouse could run on top of a ball in various
diff -r 815bc8fe64c0 -r b9b8567c14ee thesis/cortex.org
--- a/thesis/cortex.org	Mon May 12 13:26:51 2014 -0400
+++ b/thesis/cortex.org	Mon May 12 15:01:53 2014 -0400
@@ -407,7 +407,7 @@
 
 #+BEGIN_LaTeX
    \begin{sidewaysfigure}
-   \includegraphics[width=9.5in]{images/full-hand.png}
+   \includegraphics[width=8.5in]{images/full-hand.png}
    \caption{
    I modeled my own right hand in Blender and rigged it with all the
    senses that {\tt CORTEX} supports. My simulated hand has a
@@ -2150,7 +2150,7 @@
    joint from the rest position defined in the Blender file. This
    simulates the muscle-spindles and joint capsules. I will deal with
    Golgi tendon organs, which calculate muscle strain, in the next
-   chapter.
+   section (2.12).
 
 *** Helper functions
 
diff -r 815bc8fe64c0 -r b9b8567c14ee thesis/rlm-cortex-meng.tex
--- a/thesis/rlm-cortex-meng.tex	Mon May 12 13:26:51 2014 -0400
+++ b/thesis/rlm-cortex-meng.tex	Mon May 12 15:01:53 2014 -0400
@@ -32,6 +32,7 @@
 \usepackage[utf8]{inputenc}
 \usepackage[T1]{fontenc}
 %\usepackage[headheight=14pt]{geometry}
+\usepackage[margin=1in]{geometry}
 %\usepackage{fixltx2e}
 %\usepackage{graphicx}
 %\usepackage{longtable}
@@ -45,7 +46,6 @@
 \usepackage{marvosym}
 \usepackage{wasysym}
 \usepackage{amssymb}
-
 \usepackage{libertine}
 \usepackage{inconsolata}
 \usepackage{rotating}
@@ -54,6 +54,7 @@
 \usepackage{minted}    
 \usepackage{fancyhdr}
 \usepackage{hyperref}
+\usepackage[anythingbreaks]{breakurl}
 \fancyhead[RO,LE]{\bfseries \nouppercase{\rightmark}}
 \renewcommand{\subsectionmark}[1]{\markright{#1}}
 \renewcommand{\sectionmark}[1]{\markright{#1}}
@@ -123,17 +124,15 @@
 
 
 % The thesis!
+% dxh debug
+%\pagestyle{empty}
 \pagestyle{plain}
 
 \begin{document}
 \include{cover}
 
-%\pagestyle{plain}
+
 \tableofcontents
-%\newpage
-%\listoffigures
-%\newpage
-%\listoftables
 \pagestyle{fancy}
 \include{cortex}
 \pagestyle{plain}