# HG changeset patch
# User Robert McIntyre <rlm@mit.edu>
# Date 1396153310 14400
# Node ID 9ab8c19143f28c36af723ed034dae2382d6ad25b
# Parent  c15e24d243963c8835fad9f2bc5cd1d60649d58e
cleanup main thesis code.

diff -r c15e24d24396 -r 9ab8c19143f2 thesis/rlm-cortex-meng.tex
--- a/thesis/rlm-cortex-meng.tex	Sun Mar 30 00:17:54 2014 -0400
+++ b/thesis/rlm-cortex-meng.tex	Sun Mar 30 00:21:50 2014 -0400
@@ -52,14 +52,18 @@
 \usepackage[backend=bibtex,style=alphabetic]{biblatex}
 
 
+% Configure minted source code listings.
+\usemintedstyle{default}
+\newminted{clojure}{fontsize=\footnotesize}
+
+% Allow colored source code listing to break across pages.
 \newenvironment{anchoredListing}{\captionsetup{type=listing}}{}
 
 \renewenvironment{listing}{\begin{anchoredListing}}{
     \end{anchoredListing}\ignorespacesafterend
 }
-\addbibresource{cortex.bib}
 
-
+% Remove ugly boxes around hyperlinks
 \definecolor{dark-red}{rgb}{0.4,0.15,0.15}
 \definecolor{dark-blue}{rgb}{0.15,0.4,0.15}
 \definecolor{medium-blue}{rgb}{0.15,0.4,0.9}
@@ -68,59 +72,43 @@
     citecolor={dark-blue}, urlcolor={medium-blue}
 }
 
-
+% Dylan -- make labels on figures and tables simpler
 \renewcommand{\thesection}{\arabic{section}}
 \renewcommand{\thefigure}{\arabic{figure}}
 
-%%%%% better source code display
+% CORTEX annotated biblography
+\addbibresource{cortex.bib}
+\newcommand{\why}[1]{\\ \par{\footnotesize #1}\\}
 
 
-%% dyl fonts
 
-% \usemintedstyle{friendly}
-% \usemintedstyle{perldoc}
-%\definecolor{bg}{rgb}{0.95,0.95,0.95}
-\definecolor{bg}{rgb}{0.625,0,0}
-\usemintedstyle{default}
-\newcommand{\why}[1]{\\ \par{\footnotesize #1}\\}
-%\setmonofont[Scale=0.9,BoldFont={Inconsolata Bold}]{Inconsolata}
 
-%\usepackage[gray]{xcolor}
-\newminted{clojure}{fontsize=\footnotesize}
-%\newminted{clojure}{fontsize=\footnotesize,bgcolor=bg}
-%\newminted{clojure}{fontsize=\scriptsize}
-
-%\usepackage{lgrind}
-\pagestyle{plain}
-
-
-% Alter some LaTeX defaults for better treatment of figures:
-% See p.105 of "TeX Unbound" for suggested values.
-% See pp. 199-200 of Lamport's "LaTeX" book for details.
-%   General parameters, for ALL pages:
-\renewcommand{\topfraction}{0.9}	% max fraction of floats at top
-\renewcommand{\bottomfraction}{0.8}	% max fraction of floats at bottom
-%   Parameters for TEXT pages (not float pages):
-\setcounter{topnumber}{2}
-\setcounter{bottomnumber}{2}
-\setcounter{totalnumber}{4}     % 2 may work better
-\setcounter{dbltopnumber}{2}    % for 2-column pages
-\renewcommand{\dbltopfraction}{0.9}	% fit big float above 2-col. text
-\renewcommand{\textfraction}{0.07}	% allow minimal text w. figs
-%   Parameters for FLOAT pages (not text pages):
-\renewcommand{\floatpagefraction}{0.7}	% require fuller float pages
-% N.B.: floatpagefraction MUST be less than topfraction !!
-\renewcommand{\dblfloatpagefraction}{0.7}	% require fuller float pages
-% remember to use [htp] or [htpb] for placement
+%% % Alter some LaTeX defaults for better treatment of figures:
+%% % See p.105 of "TeX Unbound" for suggested values.
+%% % See pp. 199-200 of Lamport's "LaTeX" book for details.
+%% %   General parameters, for ALL pages:
+%% \renewcommand{\topfraction}{0.9}	% max fraction of floats at top
+%% \renewcommand{\bottomfraction}{0.8}	% max fraction of floats at bottom
+%% %   Parameters for TEXT pages (not float pages):
+%% \setcounter{topnumber}{2}
+%% \setcounter{bottomnumber}{2}
+%% \setcounter{totalnumber}{4}     % 2 may work better
+%% \setcounter{dbltopnumber}{2}    % for 2-column pages
+%% \renewcommand{\dbltopfraction}{0.9}	% fit big float above 2-col. text
+%% \renewcommand{\textfraction}{0.07}	% allow minimal text w. figs
+%% %   Parameters for FLOAT pages (not text pages):
+%% \renewcommand{\floatpagefraction}{0.7}	% require fuller float pages
+%% % N.B.: floatpagefraction MUST be less than topfraction !!
+%% \renewcommand{\dblfloatpagefraction}{0.7}	% require fuller float pages
+%% % remember to use [htp] or [htpb] for placement
 
 %\setmaxsecnumdepth{subsec}
+
+
+% The thesis!
+\pagestyle{plain}
 \begin{document}
-
 \include{cover}
-% Some departments (e.g. 5) require an additional signature page.  See
-% signature.tex for more information and uncomment the following line if
-% applicable.
-% \include{signature}
 \pagestyle{plain}
 \tableofcontents
 %\newpage
@@ -129,15 +117,8 @@
 %\listoftables
 \include{cortex}
 \nocite{*}
-%\include{chap2}
-%\appendix
-
-%\bibliographystyle{agsm}
-%\bibliographystyle{apa}
-%\bibliographystyle{plainnat}
-%\include{user-guide}
 \begin{singlespace}
-%\printbibliography
+\printbibliography
 \end{singlespace}
 \end{document}