# HG changeset patch
# User Robert McIntyre <rlm@mit.edu>
# Date 1395545467 14400
# Node ID 7410f0d8011c7cece5dcac93d706be7b51603f2e
# Parent  5205535237fb52fc5cba7f118893c36f1f0101e3
fix hyperlinks and bibliography.

diff -r 5205535237fb -r 7410f0d8011c thesis/cortex.bib
--- a/thesis/cortex.bib	Sat Mar 22 16:10:34 2014 -0400
+++ b/thesis/cortex.bib	Sat Mar 22 23:31:07 2014 -0400
@@ -8,23 +8,8 @@
 ADDRESS = {Berlin},
 YEAR = {1977},
 MRCLASS = {76.41 (86.41)},
-NOTE = {\why{This is a cool paper that really helped me out. It's
+ADDENDUM = {\why{This is a cool paper that really helped me out. It's
                   related to the thesis because they talk about
                   manifolds and other types of pure, unrefined
                   bullshit.}}
 }
-@incollection {Tappert78,
-AUTHOR = {Tappert, Fred D.},
-TITLE = {The parabolic approximation method},
-BOOKTITLE = {Wave propagation and underwater acoustics ({W}orkshop,
-              {M}ystic, {C}onn., 1974)},
-PAGES = {224--287. Lecture Notes in Phys., Vol. 70},
-PUBLISHER = {Springer},
-ADDRESS = {Berlin},
-YEAR = {1977},
-MRCLASS = {76.41 (86.41)},
-NOTE = {\why{This is a cool paper that really helped me out. It's
-                  related to the thesis because they talk about
-                  manifolds and other types of pure, unrefined
-                  bullshit.}}
-}
diff -r 5205535237fb -r 7410f0d8011c thesis/cortex.org
--- a/thesis/cortex.org	Sat Mar 22 16:10:34 2014 -0400
+++ b/thesis/cortex.org	Sat Mar 22 23:31:07 2014 -0400
@@ -97,4 +97,4 @@
 
 \cite{Tappert77}
 lol
-\citet{Tappert77}
\ No newline at end of file
+\cite{Tappert77}
\ No newline at end of file
diff -r 5205535237fb -r 7410f0d8011c thesis/cortex.tex
--- a/thesis/cortex.tex	Sat Mar 22 16:10:34 2014 -0400
+++ b/thesis/cortex.tex	Sat Mar 22 23:31:07 2014 -0400
@@ -97,4 +97,4 @@
 
 \cite{Tappert77}
 lol
-\citet{Tappert77}
+\cite{Tappert77}
diff -r 5205535237fb -r 7410f0d8011c thesis/rlm-cortex-meng.tex
--- a/thesis/rlm-cortex-meng.tex	Sat Mar 22 16:10:34 2014 -0400
+++ b/thesis/rlm-cortex-meng.tex	Sat Mar 22 23:31:07 2014 -0400
@@ -41,10 +41,22 @@
 \usepackage{wasysym}
 \usepackage{amssymb}
 \usepackage{hyperref}
-\usepackage{natbib}
+%\usepackage{natbib}
 \usepackage{libertine}
 \usepackage{inconsolata}
 
+\usepackage[backend=bibtex,style=alphabetic]{biblatex}
+\addbibresource{cortex.bib}
+
+\usepackage{xcolor}
+\definecolor{dark-red}{rgb}{0.4,0.15,0.15}
+\definecolor{dark-blue}{rgb}{0.15,0.4,0.15}
+\definecolor{medium-blue}{rgb}{0,0,0.5}
+\hypersetup{
+    colorlinks, linkcolor={dark-red},
+    citecolor={dark-blue}, urlcolor={medium-blue}
+}
+
 \renewcommand{\thesection}{\arabic{section}}
 
 %%%%% better source code display
@@ -86,10 +98,11 @@
 %\include{chap2}
 \appendix
 \begin{singlespace}
-\bibliography{cortex}
 %\bibliographystyle{agsm}
 %\bibliographystyle{apa}
-\bibliographystyle{plainnat}
+%\bibliographystyle{plainnat}
+
+\printbibliography
 \end{singlespace}
 \end{document}