view thesis/rlm-cortex-meng.tex @ 452:f339e3d5cc8c

finish draft of chapter 3.
author Robert McIntyre <rlm@mit.edu>
date Wed, 26 Mar 2014 22:17:42 -0400
parents 0a4362d1f138
children e4104ce9105c
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1 % -*- Mode:TeX -*-
3 %% IMPORTANT: The official thesis specifications are available at:
4 %% http://libraries.mit.edu/archives/thesis-specs/
5 %%
6 %% Please verify your thesis' formatting and copyright
7 %% assignment before submission. If you notice any
8 %% discrepancies between these templates and the
9 %% MIT Libraries' specs, please let us know
10 %% by e-mailing thesis@mit.edu
12 %% The documentclass options along with the pagestyle can be used to generate
13 %% a technical report, a draft copy, or a regular thesis. You may need to
14 %% re-specify the pagestyle after you \include cover.tex. For more
15 %% information, see the first few lines of mitthesis.cls.
17 %\documentclass[12pt,vi,twoside]{mitthesis}
18 %%
19 %% If you want your thesis copyright to you instead of MIT, use the
20 %% ``vi'' option, as above.
21 %%
22 %\documentclass[12pt,twoside,leftblank]{mitthesis}
23 %%
24 %% If you want blank pages before new chapters to be labelled ``This
25 %% Page Intentionally Left Blank'', use the ``leftblank'' option, as
26 %% above.
28 \documentclass[12pt,twoside,singlespace,vi]{mitthesis}
29 %\documentclass[12pt,twoside,vi]{mitthesis}
30 \usepackage[utf8]{inputenc}
31 \usepackage[T1]{fontenc}
32 \usepackage{fixltx2e}
33 \usepackage{graphicx}
34 \usepackage{longtable}
35 \usepackage{float}
36 \usepackage{wrapfig}
37 \usepackage{rotating}
38 \usepackage[normalem]{ulem}
39 \usepackage{amsmath}
40 \usepackage{textcomp}
41 \usepackage{marvosym}
42 \usepackage{wasysym}
43 \usepackage{amssymb}
44 \usepackage{hyperref}
45 \usepackage{libertine}
46 \usepackage{inconsolata}
47 \usepackage{rotating}
48 \usepackage{caption}
50 %\usepackage{afterpage}
52 %\afterpage{\clearpage} %
54 \usepackage[backend=bibtex,style=alphabetic]{biblatex}
55 \addbibresource{cortex.bib}
57 \usepackage{xcolor}
58 \definecolor{dark-red}{rgb}{0.4,0.15,0.15}
59 \definecolor{dark-blue}{rgb}{0.15,0.4,0.15}
60 \definecolor{medium-blue}{rgb}{0,0,0.5}
61 \hypersetup{
62 colorlinks, linkcolor={dark-red},
63 citecolor={dark-blue}, urlcolor={medium-blue}
64 }
66 \newenvironment{code}{\captionsetup{type=listing}}{}
68 \renewcommand{\thesection}{\arabic{section}}
69 \renewcommand{\thefigure}{\arabic{figure}}
71 %%%%% better source code display
72 \usepackage{minted}
74 %% dyl fonts
76 % \usemintedstyle{friendly}
77 % \usemintedstyle{perldoc}
78 %\definecolor{bg}{rgb}{0.95,0.95,0.95}
79 \definecolor{bg}{rgb}{0.625,0,0}
80 \usemintedstyle{default}
81 \newcommand{\why}[1]{\\ \par{\footnotesize #1}}
82 %\setmonofont[Scale=0.9,BoldFont={Inconsolata Bold}]{Inconsolata}
84 %\usepackage[gray]{xcolor}
85 \newminted{clojure}{fontsize=\footnotesize}
86 %\newminted{clojure}{fontsize=\footnotesize,bgcolor=bg}
87 %\newminted{clojure}{fontsize=\scriptsize}
89 %\usepackage{lgrind}
90 \pagestyle{plain}
93 %% % Alter some LaTeX defaults for better treatment of figures:
94 %% % See p.105 of "TeX Unbound" for suggested values.
95 %% % See pp. 199-200 of Lamport's "LaTeX" book for details.
96 %% % General parameters, for ALL pages:
97 %% \renewcommand{\topfraction}{0.9} % max fraction of floats at top
98 %% \renewcommand{\bottomfraction}{0.8} % max fraction of floats at bottom
99 %% % Parameters for TEXT pages (not float pages):
100 %% \setcounter{topnumber}{2}
101 %% \setcounter{bottomnumber}{2}
102 %% \setcounter{totalnumber}{4} % 2 may work better
103 %% \setcounter{dbltopnumber}{2} % for 2-column pages
104 %% \renewcommand{\dbltopfraction}{0.9} % fit big float above 2-col. text
105 %% \renewcommand{\textfraction}{0.07} % allow minimal text w. figs
106 %% % Parameters for FLOAT pages (not text pages):
107 %% \renewcommand{\floatpagefraction}{0.7} % require fuller float pages
108 %% % N.B.: floatpagefraction MUST be less than topfraction !!
109 %% \renewcommand{\dblfloatpagefraction}{0.7} % require fuller float pages
110 %% % remember to use [htp] or [htpb] for placement
113 \begin{document}
115 \include{cover}
116 % Some departments (e.g. 5) require an additional signature page. See
117 % signature.tex for more information and uncomment the following line if
118 % applicable.
119 % \include{signature}
120 \pagestyle{plain}
121 \tableofcontents
122 %\newpage
123 %\listoffigures
124 %\newpage
125 %\listoftables
126 \include{cortex}
127 \nocite{*}
128 %\include{chap2}
129 \appendix
130 \begin{singlespace}
131 %\bibliographystyle{agsm}
132 %\bibliographystyle{apa}
133 %\bibliographystyle{plainnat}
134 \include{user-guide}
135 \printbibliography
136 \end{singlespace}
137 \end{document}