1.1 --- a/thesis/rlm-cortex-meng.tex	Fri Mar 21 15:43:15 2014 -0400
     1.2 +++ b/thesis/rlm-cortex-meng.tex	Fri Mar 21 20:56:56 2014 -0400
     1.3 @@ -25,7 +25,7 @@
     1.4  %% Page Intentionally Left Blank'', use the ``leftblank'' option, as
     1.5  %% above. 
     1.6  
     1.7 -\documentclass[12pt,twoside]{mitthesis}
     1.8 +\documentclass[12pt,twoside,singlespace]{mitthesis}
     1.9  \usepackage[utf8]{inputenc}
    1.10  \usepackage[T1]{fontenc}
    1.11  \usepackage{fixltx2e}
    1.12 @@ -41,19 +41,29 @@
    1.13  \usepackage{wasysym}
    1.14  \usepackage{amssymb}
    1.15  \usepackage{hyperref}
    1.16 +\usepackage{natbib}
    1.17 +\usepackage{libertine}
    1.18 +\usepackage{inconsolata}
    1.19 +
    1.20 +\renewcommand{\thesection}{\arabic{section}}
    1.21  
    1.22  %%%%% better source code display
    1.23  \usepackage{minted}
    1.24  
    1.25 +%% dyl fonts
    1.26 +
    1.27  % \usemintedstyle{friendly}
    1.28  % \usemintedstyle{perldoc}
    1.29  %\definecolor{bg}{rgb}{0.95,0.95,0.95}
    1.30 -\definecolor{bg}{rgb}{0.95,0.95,0.95}
    1.31 +\definecolor{bg}{rgb}{0.625,0,0}
    1.32  \usemintedstyle{default}
    1.33 +\newcommand{\why}[1]{\\ \par{\footnotesize #1}}
    1.34 +%\setmonofont[Scale=0.9,BoldFont={Inconsolata Bold}]{Inconsolata}
    1.35  
    1.36 -
    1.37 -%\newminted{clojure}{fontsize=\scriptsize,bgcolor=bg}
    1.38 -\newminted{clojure}{fontsize=\scriptsize}
    1.39 +%\usepackage[gray]{xcolor}
    1.40 +\newminted{clojure}{fontsize=\footnotesize}
    1.41 +%\newminted{clojure}{fontsize=\footnotesize,bgcolor=bg}
    1.42 +%\newminted{clojure}{fontsize=\scriptsize}
    1.43  
    1.44  %\usepackage{lgrind}
    1.45  \pagestyle{plain}
    1.46 @@ -66,13 +76,20 @@
    1.47  % applicable.
    1.48  % \include{signature}
    1.49  \pagestyle{plain}
    1.50 -\include{contents}
    1.51 +\tableofcontents
    1.52 +%\newpage
    1.53 +%\listoffigures
    1.54 +%\newpage
    1.55 +%\listoftables
    1.56  \include{cortex}
    1.57 +\nocite{*}
    1.58  %\include{chap2}
    1.59  \appendix
    1.60  \begin{singlespace}
    1.61  \bibliography{cortex}
    1.62 -\bibliographystyle{plain}
    1.63 +%\bibliographystyle{agsm}
    1.64 +%\bibliographystyle{apa}
    1.65 +\bibliographystyle{plainnat}
    1.66  \end{singlespace}
    1.67  \end{document}
    1.68