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annotate thesis/rlm-cortex-meng.tex @ 449:09b7c8dd4365

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first chapter done, half of last chapter done.
author Robert McIntyre <rlm@mit.edu>
date Wed, 26 Mar 2014 02:42:01 -0400
parents 47cfbe84f00e
children 0a4362d1f138
rev   line source
rlm@428 1 % -*- Mode:TeX -*-
rlm@427 2
rlm@428 3 %% IMPORTANT: The official thesis specifications are available at:
rlm@428 4 %% http://libraries.mit.edu/archives/thesis-specs/
rlm@428 5 %%
rlm@428 6 %% Please verify your thesis' formatting and copyright
rlm@428 7 %% assignment before submission. If you notice any
rlm@428 8 %% discrepancies between these templates and the
rlm@428 9 %% MIT Libraries' specs, please let us know
rlm@428 10 %% by e-mailing thesis@mit.edu
rlm@427 11
rlm@428 12 %% The documentclass options along with the pagestyle can be used to generate
rlm@428 13 %% a technical report, a draft copy, or a regular thesis. You may need to
rlm@428 14 %% re-specify the pagestyle after you \include cover.tex. For more
rlm@428 15 %% information, see the first few lines of mitthesis.cls.
rlm@427 16
rlm@428 17 %\documentclass[12pt,vi,twoside]{mitthesis}
rlm@428 18 %%
rlm@428 19 %% If you want your thesis copyright to you instead of MIT, use the
rlm@428 20 %% ``vi'' option, as above.
rlm@428 21 %%
rlm@428 22 %\documentclass[12pt,twoside,leftblank]{mitthesis}
rlm@428 23 %%
rlm@428 24 %% If you want blank pages before new chapters to be labelled ``This
rlm@428 25 %% Page Intentionally Left Blank'', use the ``leftblank'' option, as
rlm@428 26 %% above.
rlm@427 27
rlm@441 28 \documentclass[12pt,twoside,singlespace,vi]{mitthesis}
rlm@428 29 \usepackage[utf8]{inputenc}
rlm@428 30 \usepackage[T1]{fontenc}
rlm@428 31 \usepackage{fixltx2e}
rlm@428 32 \usepackage{graphicx}
rlm@428 33 \usepackage{longtable}
rlm@428 34 \usepackage{float}
rlm@428 35 \usepackage{wrapfig}
rlm@428 36 \usepackage{rotating}
rlm@428 37 \usepackage[normalem]{ulem}
rlm@428 38 \usepackage{amsmath}
rlm@428 39 \usepackage{textcomp}
rlm@428 40 \usepackage{marvosym}
rlm@428 41 \usepackage{wasysym}
rlm@428 42 \usepackage{amssymb}
rlm@428 43 \usepackage{hyperref}
rlm@429 44 \usepackage{libertine}
rlm@429 45 \usepackage{inconsolata}
rlm@449 46 \usepackage{rotating}
rlm@429 47
rlm@431 48 \usepackage[backend=bibtex,style=alphabetic]{biblatex}
rlm@431 49 \addbibresource{cortex.bib}
rlm@431 50
rlm@431 51 \usepackage{xcolor}
rlm@431 52 \definecolor{dark-red}{rgb}{0.4,0.15,0.15}
rlm@431 53 \definecolor{dark-blue}{rgb}{0.15,0.4,0.15}
rlm@431 54 \definecolor{medium-blue}{rgb}{0,0,0.5}
rlm@431 55 \hypersetup{
rlm@431 56 colorlinks, linkcolor={dark-red},
rlm@431 57 citecolor={dark-blue}, urlcolor={medium-blue}
rlm@431 58 }
rlm@431 59
rlm@429 60 \renewcommand{\thesection}{\arabic{section}}
rlm@445 61 \renewcommand{\thefigure}{\arabic{figure}}
rlm@427 62
rlm@428 63 %%%%% better source code display
rlm@428 64 \usepackage{minted}
rlm@427 65
rlm@429 66 %% dyl fonts
rlm@429 67
rlm@428 68 % \usemintedstyle{friendly}
rlm@428 69 % \usemintedstyle{perldoc}
rlm@428 70 %\definecolor{bg}{rgb}{0.95,0.95,0.95}
rlm@429 71 \definecolor{bg}{rgb}{0.625,0,0}
rlm@428 72 \usemintedstyle{default}
rlm@429 73 \newcommand{\why}[1]{\\ \par{\footnotesize #1}}
rlm@429 74 %\setmonofont[Scale=0.9,BoldFont={Inconsolata Bold}]{Inconsolata}
rlm@427 75
rlm@429 76 %\usepackage[gray]{xcolor}
rlm@429 77 \newminted{clojure}{fontsize=\footnotesize}
rlm@429 78 %\newminted{clojure}{fontsize=\footnotesize,bgcolor=bg}
rlm@429 79 %\newminted{clojure}{fontsize=\scriptsize}
rlm@427 80
rlm@428 81 %\usepackage{lgrind}
rlm@428 82 \pagestyle{plain}
rlm@427 83
rlm@428 84 \begin{document}
rlm@427 85
rlm@428 86 \include{cover}
rlm@428 87 % Some departments (e.g. 5) require an additional signature page. See
rlm@428 88 % signature.tex for more information and uncomment the following line if
rlm@428 89 % applicable.
rlm@428 90 % \include{signature}
rlm@428 91 \pagestyle{plain}
rlm@429 92 \tableofcontents
rlm@429 93 %\newpage
rlm@429 94 %\listoffigures
rlm@429 95 %\newpage
rlm@429 96 %\listoftables
rlm@428 97 \include{cortex}
rlm@429 98 \nocite{*}
rlm@428 99 %\include{chap2}
rlm@428 100 \appendix
rlm@428 101 \begin{singlespace}
rlm@429 102 %\bibliographystyle{agsm}
rlm@429 103 %\bibliographystyle{apa}
rlm@431 104 %\bibliographystyle{plainnat}
rlm@437 105 \include{user-guide}
rlm@431 106 \printbibliography
rlm@428 107 \end{singlespace}
rlm@428 108 \end{document}
rlm@427 109